I apparently have to use "kolmogorov smirnov" test to obtain this plot. But have no clue how to go about it.
Kushal
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Do you want to overlap the peaks with the TSS region to see how many peaks are at TSS (-3kb to TSS)?
Bedtools or Galaxy can do this kind of job.
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Thanks buddy. I was more concerned about the peak fraction. Well, will try ngs.plot and get back.
Many thanks
Kushal
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TSS v/s peak fraction graph for ChIP-Seq
Dear All,
I want to plot a graph of TSS v/s peak fractions for my ChIP-Seq data. Organism :Rice.
I have the peak files containing the TSS distances but not able to figure out how to plot the graph. Any help would be much appreciated.
Thanks in anticipation
KushalTags: None
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