Hello all-
Relatively new to the world of biopython, so I am getting snagged on transferring over to the language. My most recent hangup is in the process of attempting to convert a Roche 454 Titanium .sff file to a fasta file. I am attempting to implement the freely available sff_extract and believe I have been successful of at least getting biopython to read the script (hopefully, I can get the help functionality to spit out the information about the module). However, I get an error when trying to implement it on our .sff file. Here is the error:
>>>sff_extract Test.sff
File "<stdin>", line 1
sff_extract Test.sff
^
SyntaxError: invalid syntax
The pointer is under the little t. Any insight or advice would be most useful!
Thanks in advance.
Relatively new to the world of biopython, so I am getting snagged on transferring over to the language. My most recent hangup is in the process of attempting to convert a Roche 454 Titanium .sff file to a fasta file. I am attempting to implement the freely available sff_extract and believe I have been successful of at least getting biopython to read the script (hopefully, I can get the help functionality to spit out the information about the module). However, I get an error when trying to implement it on our .sff file. Here is the error:
>>>sff_extract Test.sff
File "<stdin>", line 1
sff_extract Test.sff
^
SyntaxError: invalid syntax
The pointer is under the little t. Any insight or advice would be most useful!
Thanks in advance.
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