Originally posted by JamieHeather
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TP
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for i in *sra; do fastq-dump --split-3 $i; done
for i in *sra; do fastq-dump --split-3 $i; done
fastq-dump *.sra rm *.sra
fastq-dump *
DIR="$1/*.sra" for file in $DIR do /path/to/fastq-dump $file done
for fn in *.sra do ./sratoolkit.2.3.2-5-mac-64/bin/fastq-dump /full_path_to/"$fn".sra done
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