Hi all,
I used bowtie to align a collapsed fasta file to the bovine genome and get a fasta file (mapped.fa) including all the mapped reads. But this mapped.fa is also a collapsed file. So how could I get the total reads number in mapped.fa, instead of the unique reads number?
Thanks.
Ran
I used bowtie to align a collapsed fasta file to the bovine genome and get a fasta file (mapped.fa) including all the mapped reads. But this mapped.fa is also a collapsed file. So how could I get the total reads number in mapped.fa, instead of the unique reads number?
Thanks.
Ran
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