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  • #1

    Velvet assembly stats

    Hi everyone,

    My question is about the analysis of velvet denovo assembly.
    Are the statistics printed out on the Log file the final real statistics of the assembly?
    How does one go about to analyze the assembly from velvet to see if if it is of good quality.
    I will appreciate whatever ideas you give, even if its re-directing me to a paper that talks about that.
    Tags: de novo assembly, velvet
  • #2
    Originally posted by NGS_New_User View Post
    Hi everyone,

    Are the statistics printed out on the Log file the final real statistics of the assembly?
    Yes, they are.

    Have a look at this paper:

    GAGE: A critical evaluation of genome assemblies and assembly algorithms
    http://genome.cshlp.org/content/22/3/557.abstract
    An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms
    Last edited by mastal; 08-02-2013, 03:03 PM.

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