I am using BEDTools and getting the following error:
I had a GFF file and figured maybe there is indeed a problem, so I converted it to a 3-column BED file just to be safe. The BED file did not work either.
I searched around for this error and it's usually caused by non-unix newlines or non-tab separators. My file does not have either of those issues.
Here are the first few lines of the BED file:
Any idea what may be causing this error?
Code:
Unexpected file format. Please use tab-delimited BED, GFF, or VCF. Perhaps you have non-integer starts or ends at line 1?
I searched around for this error and it's usually caused by non-unix newlines or non-tab separators. My file does not have either of those issues.
Here are the first few lines of the BED file:
Code:
chr1 3214482 3216968 chr1 3421702 3421901 chr1 3670552 3671498 chr1 4290846 4293012 chr1 4343507 4350091
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