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  • #1

    software that aligns markers from different assemblies and merges names?

    Heya,

    I've got a bunch of markers that I'd like to align to two different genomes and make a consensus sequence that will sport a concatenated name representing the approximate physical location of a marker in each genome. E.g.

    >seq_name_from_alignment2
    ACTGT

    >seq_name_from_alignment1
    ACTGT

    = >seq_name_from_alignment1 seq_name_from_alignment2
    ACTGT

    Cap3 outputs the sequences that went into making a consensus, so I could pull them out, but is there any software capable of doing this in a less silly way?
    Tags: None
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