Heya,
I've got a bunch of markers that I'd like to align to two different genomes and make a consensus sequence that will sport a concatenated name representing the approximate physical location of a marker in each genome. E.g.
>seq_name_from_alignment2
ACTGT
>seq_name_from_alignment1
ACTGT
= >seq_name_from_alignment1 seq_name_from_alignment2
ACTGT
Cap3 outputs the sequences that went into making a consensus, so I could pull them out, but is there any software capable of doing this in a less silly way?
I've got a bunch of markers that I'd like to align to two different genomes and make a consensus sequence that will sport a concatenated name representing the approximate physical location of a marker in each genome. E.g.
>seq_name_from_alignment2
ACTGT
>seq_name_from_alignment1
ACTGT
= >seq_name_from_alignment1 seq_name_from_alignment2
ACTGT
Cap3 outputs the sequences that went into making a consensus, so I could pull them out, but is there any software capable of doing this in a less silly way?
