Hello everyone,
I am trying to filter some fastq files based on the quality scores obtained by fastqc. However after running fastq_quality_filter from the fastx tools I realized that there are not removed sequences in the outpout file. Somehow, the program is not cleaning the original file.
My commands:
$ fastq_quality_filter -Q28 -p 100 -i input.fastq -o output.fastq
Any suggestions? Could it be a encoding issue? my files are in Sanger Illumina 1.9 encoding
Thank you for any help
I am trying to filter some fastq files based on the quality scores obtained by fastqc. However after running fastq_quality_filter from the fastx tools I realized that there are not removed sequences in the outpout file. Somehow, the program is not cleaning the original file.
My commands:
$ fastq_quality_filter -Q28 -p 100 -i input.fastq -o output.fastq
Any suggestions? Could it be a encoding issue? my files are in Sanger Illumina 1.9 encoding
Thank you for any help
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