Finally, i modified export2sam.pl in samtool package to a new script of sorted2sam.pl to process s_N_sorted.txt (eland alignment). It works well.
Now i am able to use Tablet tool to view my alignment. It looks cool.
Two features i would like to have:
1. It is better that the base rules will show the number, although the mouse shows where is it.
2. if we could sort reads by readname, it would be very nice.
We will see much better of SNPs between samples if reads from the same sample could be ordered together.
By the way, if someone wants sorted2sam.pl, please email me:[email protected]
Note: I have tested on single read alignment and not paired end read alignment.
Now i am able to use Tablet tool to view my alignment. It looks cool.
Two features i would like to have:
1. It is better that the base rules will show the number, although the mouse shows where is it.
2. if we could sort reads by readname, it would be very nice.
We will see much better of SNPs between samples if reads from the same sample could be ordered together.
By the way, if someone wants sorted2sam.pl, please email me:[email protected]
Note: I have tested on single read alignment and not paired end read alignment.
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