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Hi,
I use annovar to select variants. I used enseml for gene annotation and filtered my variants. To find out the gene name pertaining to variants, I used refseq for the final variants.
annotate_variation.pl -geneanno -dbtype refgene myfile.step6.varlist humandb/
Is it correct to use refseq although ensemble was used before filtering variants?
or do I get the wrong gene names for the final variants?
Look forward to your reply,
Carol
I use annovar to select variants. I used enseml for gene annotation and filtered my variants. To find out the gene name pertaining to variants, I used refseq for the final variants.
annotate_variation.pl -geneanno -dbtype refgene myfile.step6.varlist humandb/
Is it correct to use refseq although ensemble was used before filtering variants?
or do I get the wrong gene names for the final variants?
Look forward to your reply,
Carol