All, we have been using DESeq for about a year now, and would like to compare our results to DESeq2.
We have been using raw count files in text format. What are the commands to convert a text files (.csv) to a format readable by DESeq2? This may be obvious to experienced R users, but has us at a complete loss.
Our files contain gene names in column 1 and sample names (biological replicates, 4 for each experimental condition) in row 1. Gene names are not duplicated and counts are in integers.
We have been using raw count files in text format. What are the commands to convert a text files (.csv) to a format readable by DESeq2? This may be obvious to experienced R users, but has us at a complete loss.
Our files contain gene names in column 1 and sample names (biological replicates, 4 for each experimental condition) in row 1. Gene names are not duplicated and counts are in integers.
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