I am attempting to use Velvet to analyze some data from our lab. During a practice run, I noticed that the output from velvet had some odd contigs (length 1, coverage 300,000), so I decided to place some parameters on it. I set the minimum coverage to 10, and the minimum contig length to 10. When I checked the new output, the minimum coverage had been implemented, but it didn't appear that the minimum contig length had. Looking at the stats file, I still had contigs of length 1. However, upon looking at the contigs.fa file, I found that my contig length had been implemented.
Does anyone know why my contig file is correct, but my stats file does not reflect my contig-length restriction?
Does anyone know why my contig file is correct, but my stats file does not reflect my contig-length restriction?
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