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theoretically, you can. You need to derive GO annotation for the genes of this species using tools like blast2go. Then generate GO gene set data like the ones used in gage tutorial. You need to use R function split() to get the gene set list.
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Any chance someone already encountered this kind of summarizeOverlaps error?
http://seqanswers.com/forums/showthr...806#post184806Comment
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Please don't post the same issue in multiple threads. It's good that you created a new thread for this problem, but you need to give people some credit for being able to find existing threads without further advertising.Comment
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The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...Today, 07:48 AM -
The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...04-22-2024, 07:01 AM
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