Hello,
This is my first time to use bowtie and have trouble with running it and interpreting the output.
Below is the command I used.
bowtie index -f fastafile > output
The number of reads with at least one reported alignment is less than 1%. Please help me if there is anyway that I can try to improve it. Thanks.
This is my first time to use bowtie and have trouble with running it and interpreting the output.
Below is the command I used.
bowtie index -f fastafile > output
The number of reads with at least one reported alignment is less than 1%. Please help me if there is anyway that I can try to improve it. Thanks.
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