Hi all,
I just downloaded bowtie2 into my cluster environment, along with the human genomic file. My command was: bowtie2 -f -x /scratch/user/mstoll/bowtie2/bowtie2-2.1.0/indexes/hg18 -U sample_data.fasta
The error message reads: Error reading _ebwt[] array: 129105920, 956874752
Error: Encountered internal Bowtie 2 exception (#1)
A similar problem was discussed on this forum about three years ago, and the suggestion was raised that the files could be corrupt. I re-ran the make_hg18.sh script, but that didn't solve the problem. Not sure how to tell if the file is corrupt.
I just downloaded bowtie2 into my cluster environment, along with the human genomic file. My command was: bowtie2 -f -x /scratch/user/mstoll/bowtie2/bowtie2-2.1.0/indexes/hg18 -U sample_data.fasta
The error message reads: Error reading _ebwt[] array: 129105920, 956874752
Error: Encountered internal Bowtie 2 exception (#1)
A similar problem was discussed on this forum about three years ago, and the suggestion was raised that the files could be corrupt. I re-ran the make_hg18.sh script, but that didn't solve the problem. Not sure how to tell if the file is corrupt.
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