Looking for sample MiSeq output

[jpleonard2000]

Hello All,

I am going to receive data from a MiSeq run consisting of 300 multiplexed small amplicons in a week or so. This will be my first time analyzing NextGeneration sequencing data, so I am trying to learn how to use some of the necessary programs now. Specifically, I will be using FLASH, FastQC, PrinSeq, and jMHC.

Does anyone know of any sample datasets that I can access online in order to start playing around with these programs? Ideally, the dataset would consist of a bunch of multiplexed samples with 150bp paired end reads. Thanks.

[DRYTCYV]

Hi,
Open an account in MyIllumina, and in Basespace i think you can download some files of different projects. p ex. if you search for 16S protocol, there's a link to a Project in Basespace.

[jimmybee]

NCBI SRA database