Hi,
I'm trying to extract 'unique' features from either BED or BAM. I have small RNAseq data that I want to use to identify novel short RNAs transcribed from a specific genomic region. Those short RNAs overlap, but I don't want to assemble them into a larger transcript, but rather extract all 'unique' short RNAs. Each of those overlapping short RNAs is also covered by many reads.
Basically I want to perform something like mergeBed, but forcing a 100% similarity. Is there a tool available that would allow me to do that?
I'm trying to extract 'unique' features from either BED or BAM. I have small RNAseq data that I want to use to identify novel short RNAs transcribed from a specific genomic region. Those short RNAs overlap, but I don't want to assemble them into a larger transcript, but rather extract all 'unique' short RNAs. Each of those overlapping short RNAs is also covered by many reads.
Basically I want to perform something like mergeBed, but forcing a 100% similarity. Is there a tool available that would allow me to do that?
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