Hi there!
Does anybody have experience with WindowMasker used on 2nd Gen genomes? I started running it according to the manual (http://www.ncbi.nlm.nih.gov/IEB/Tool...app/winmasker/), but it appears to mask like most of my genome sequence.
This is clearly in contrast to what RepeatModeller and subsequent RepeatMasker produce. They mask about 10% of the genome.
Is there a way to fine tune WindowMasker? Maybe a more comprehensive description than in the manual?
Thanks
Philipp
Does anybody have experience with WindowMasker used on 2nd Gen genomes? I started running it according to the manual (http://www.ncbi.nlm.nih.gov/IEB/Tool...app/winmasker/), but it appears to mask like most of my genome sequence.
This is clearly in contrast to what RepeatModeller and subsequent RepeatMasker produce. They mask about 10% of the genome.
Is there a way to fine tune WindowMasker? Maybe a more comprehensive description than in the manual?
Thanks
Philipp