Hi everyone,
Does anyone know how reads are quality-filtered in BWA-MEM2 ? What is the exact formula, and how are reads filtered ? I guess the formula is something along that line :
matches*score + mismatches*score + gaps*score
but I haven't been abled to confirm this. I guess there is documentation somewhere, but I am at a loss as to where it is ...
Thank you for your help.
Does anyone know how reads are quality-filtered in BWA-MEM2 ? What is the exact formula, and how are reads filtered ? I guess the formula is something along that line :
matches*score + mismatches*score + gaps*score
but I haven't been abled to confirm this. I guess there is documentation somewhere, but I am at a loss as to where it is ...
Thank you for your help.