Hi All,
Wondering if you can help me out. I want to carry out comparative genome analysis of two bacterial species. For one of the species the annotated whole genome sequence is available on genbank. The other however is only available as contigs. I presume these contigs on genbank are not in order therefore I need to put them in the correct order.
I have tried using Mauve contig mover to do this but keep getting an error message and the run is terminated.
I have annotated the unordered contigs on RAST and can compare this to my reference genome (the species I have a complete genome sequence for)...does this now mean that my contigs are in the correct order or do I still need to put them in the correct order before uploading to RAST?
Wondering if you can help me out. I want to carry out comparative genome analysis of two bacterial species. For one of the species the annotated whole genome sequence is available on genbank. The other however is only available as contigs. I presume these contigs on genbank are not in order therefore I need to put them in the correct order.
I have tried using Mauve contig mover to do this but keep getting an error message and the run is terminated.
I have annotated the unordered contigs on RAST and can compare this to my reference genome (the species I have a complete genome sequence for)...does this now mean that my contigs are in the correct order or do I still need to put them in the correct order before uploading to RAST?
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