-
Is this gene included in the GTF file you provide to cufflinks? If not: did you enable the search for novel genes (--GTF-guide)? -
Do those reads also match another place in the genome? I.e. they are not unique.Leave a comment:
-
why cufflinks can not assembly the reads mapped to genome
Hi, all
I want to search a specific gene from the gtf file from the result of cufflinks. But I can not find it which means there is no assembly result from cufflinks. However, I find about 240 reads can be blasted to this gene which I got from NCBI so that I know there are 240 reads can mapped to this region of genome corresponding to that gene. the blast result is shown in the picture.
My question is why cufflinks does not assembly these reads even though they are mapped to genome?Last edited by 11xinqi; 12-03-2013, 07:47 AM.
-
Non-coding RNAs (ncRNAs) do not code for proteins but play important roles in numerous cellular processes including gene silencing, developmental pathways, and more. There are numerous types including microRNA (miRNA), long ncRNA (lncRNA), circular RNA (circRNA), and more. In this article, we discuss innovative ncRNA research and explore recent technological advancements that improve the study of ncRNAs.
Nobel Prize for MicroRNA Discovery
This week,...10-07-2024, 08:07 AM -
Metagenomics has improved the way researchers study microorganisms across diverse environments. Historically, studying microorganisms relied on culturing them in the lab, a method that limits the investigation of many species since most are unculturable1. Metagenomics overcomes these issues by allowing the study of microorganisms regardless of their ability to be cultured or the environments they inhabit. Over time, the field has evolved, especially with the advent...09-23-2024, 06:35 AM
Leave a comment: