I've got a partial assembly of a low coverage genome (about 250k contigs) and a set of assembled cDNAs I'd like to map to those contigs to get a first guess as to where the introns lie, etc-. Is there a nice piece of software that'll do that relatively quickly? I suppose I could do it with several rounds of blast, or even script a pipeline that makes a blast DB from each assembled genome contig and runs the cnda against it, but I figured I'd ask here first. Visualization would also be a nice plus...
Thanks!
Thanks!
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