RNA-seq reads are mapped to the genomic coordinates and then visualized in something like IGV or UCSC Genome Browser. However, all viewers seem to include introns in the output. For smaller genes, this is fine, but for genes with a lot of introns and/or large introns, this becomes more difficult.
Is there a tool that can take out introns for visualizing transcriptome data? I'd like to see coverage across the entire gene without all the unnecessary gaps. Is that possible?
Is there a tool that can take out introns for visualizing transcriptome data? I'd like to see coverage across the entire gene without all the unnecessary gaps. Is that possible?
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