I'm looking for suggestions on decreasing memory usage by Tophat. I don't think I had this problem previously, but with my current data sets I'm seeing the segment_juncs process using close to 9 GB of RAM (and only 1.9% CPU). I had previously been able to run 4 tophat searches at a time, but I can barely run 2 now because they quickly use up all the available memory.
I'm running Tophat v1.0.13 and Bowtie version 0.12.2 on Mac OS X.
Thanks!
Gene
I'm running Tophat v1.0.13 and Bowtie version 0.12.2 on Mac OS X.
Thanks!
Gene
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