Dear Next-gen fans,
I am attempting to identify and view SNPs from my single end Solexa data. I have done alignment in Bowtie and have been attempting to identify SNPs and Indels using SAMTools but I cannot find a viewer that will let me visualize them in context.
1. Is there a better program available to find SNPs?
2. Is there a preferred viewer to use to visualize said SNPS?
- Cheers,
S Honco
I am attempting to identify and view SNPs from my single end Solexa data. I have done alignment in Bowtie and have been attempting to identify SNPs and Indels using SAMTools but I cannot find a viewer that will let me visualize them in context.
1. Is there a better program available to find SNPs?
2. Is there a preferred viewer to use to visualize said SNPS?
- Cheers,
S Honco
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