Hi, I am new in genomics, have very little idea about sequencing and bioinformatics. so my questions will address some very basic issues. I will really appriciate if you can help me with few stuff.
I was trying to run bowtie in my windows machine, following their tutorial. After using the first command the software showed the alignment of the e.coli short reads.
The results are printed out with each short read and where they map to the ref genome(with position). Now, i want to see a long stretch of dna from the short reads which says all about their position in the ref genome. Like BLAT or BLAST generates.How I am going to get that using bowtie?
thanks.
I was trying to run bowtie in my windows machine, following their tutorial. After using the first command the software showed the alignment of the e.coli short reads.
The results are printed out with each short read and where they map to the ref genome(with position). Now, i want to see a long stretch of dna from the short reads which says all about their position in the ref genome. Like BLAT or BLAST generates.How I am going to get that using bowtie?
thanks.