Dear all,
I have recently encountered a weird error with BWA (0.4.5)alignment. It runs fine to generate .sai file, but when I ran "bwa samse", I got "segmentation fault". The weird thing is though, it was OK with MAQ 0.7.1, and OK with tophat (1.0.12)
A few lines from the log are like the following:
[bwa_aln_core] 4718592 sequences have been processed.
[bwa_aln_core] convert to sequence coordinate... 1.14 sec
[bwa_aln_core] refine gapped alignments... 0.21 sec
[bwa_aln_core] print alignments... 0.57 sec
[bwa_aln_core] 4980736 sequences have been processed.
[bwa_aln_core] convert to sequence coordinate... 1.13 sec
[bwa_aln_core] refine gapped alignments... Segmentation fault
Any help is highly appreciated.
Jianying Li
I have recently encountered a weird error with BWA (0.4.5)alignment. It runs fine to generate .sai file, but when I ran "bwa samse", I got "segmentation fault". The weird thing is though, it was OK with MAQ 0.7.1, and OK with tophat (1.0.12)
A few lines from the log are like the following:
[bwa_aln_core] 4718592 sequences have been processed.
[bwa_aln_core] convert to sequence coordinate... 1.14 sec
[bwa_aln_core] refine gapped alignments... 0.21 sec
[bwa_aln_core] print alignments... 0.57 sec
[bwa_aln_core] 4980736 sequences have been processed.
[bwa_aln_core] convert to sequence coordinate... 1.13 sec
[bwa_aln_core] refine gapped alignments... Segmentation fault
Any help is highly appreciated.
Jianying Li
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