Hi community,
I want to filter my SAM/BAM files to just keep my transcripts above 1000bp. What I am doing now is to convert my SAM/BAM files into fasta and then filter them but then I have problems to run RSEM due to the input file is a SAM file and I couldn't find how to convert fasta into SAM.
Anyone???
Thanks.
I want to filter my SAM/BAM files to just keep my transcripts above 1000bp. What I am doing now is to convert my SAM/BAM files into fasta and then filter them but then I have problems to run RSEM due to the input file is a SAM file and I couldn't find how to convert fasta into SAM.
Anyone???
Thanks.
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