Hi folks,
in the early days of sequencing there were several fractal and entropy based visualization algorithms. These tools were very handy to get a quick grasp for patterns in the DNA sequences.
I would like to analyze some of my reads (especially those, that don't map) with such algorithms.
Does anyone know if there are already descent implementations of such algorithms for short read NGS data?
Cheers,
Peter
in the early days of sequencing there were several fractal and entropy based visualization algorithms. These tools were very handy to get a quick grasp for patterns in the DNA sequences.
I would like to analyze some of my reads (especially those, that don't map) with such algorithms.
Does anyone know if there are already descent implementations of such algorithms for short read NGS data?
Cheers,
Peter
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