Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • help with trinity and jellyfish

    Dear all,

    When i using Trinity for rna-seq assembly, i setup jellyfish and have an error
    make all-am
    make[1]: Entering directory `/home/huypham/Tools/denovotranscriptome/trinityrnaseq_r20131110/trinity-plugins/jellyfish-1.1.6'
    CXX jellyfish/libjellyfish_la-square_binary_matrix.lo
    CXX jellyfish/libjellyfish_la-err.lo
    In file included from jellyfish/err.cc:17:0:
    ./jellyfish/err.hpp: In static member function 'static void err::no_t::write(std:stream&, int)':
    ./jellyfish/err.hpp:42:46: error: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Werror=unused-result]
    strerror_r(e, err_str, sizeof(err_str));
    ^
    cc1plus: all warnings being treated as errors
    make[1]: *** [jellyfish/libjellyfish_la-err.lo] Error 1
    make[1]: Leaving directory `/home/huypham/Tools/denovotranscriptome/trinityrnaseq_r20131110/trinity-plugins/jellyfish-1.1.6'
    make: *** [all] Error 2
    which library i miss in ubuntu ?
    thanks in advance

  • #2
    sr all, i 've just fix this by re-setup of trinity and now i can make jellyfish 1.1.6 tks all for read

    Comment


    • #3
      how have you fixed it ?

      Hello,

      I'm getting the same error when trying to "make" trinity v 2012-06-08 on ubuntu. I was wondering how did you solve the issue...

      I'm trying to use this version with virusfinder2.0, since it doesn't seem to work for me with trinity versions 2.0.2 or 2.0.6 ... The latter versions, however, install ok and pass the "runME.sh" test, but don't work with virusfinder2.0.

      help please!

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Choosing Between NGS and qPCR
        by seqadmin



        Next-generation sequencing (NGS) and quantitative polymerase chain reaction (qPCR) are essential techniques for investigating the genome, transcriptome, and epigenome. In many cases, choosing the appropriate technique is straightforward, but in others, it can be more challenging to determine the most effective option. A simple distinction is that smaller, more focused projects are typically better suited for qPCR, while larger, more complex datasets benefit from NGS. However,...
        10-18-2024, 07:11 AM
      • seqadmin
        Non-Coding RNA Research and Technologies
        by seqadmin




        Non-coding RNAs (ncRNAs) do not code for proteins but play important roles in numerous cellular processes including gene silencing, developmental pathways, and more. There are numerous types including microRNA (miRNA), long ncRNA (lncRNA), circular RNA (circRNA), and more. In this article, we discuss innovative ncRNA research and explore recent technological advancements that improve the study of ncRNAs.

        Nobel Prize for MicroRNA Discovery
        This week,...
        10-07-2024, 08:07 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, 11-01-2024, 06:09 AM
      0 responses
      18 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 10-30-2024, 05:31 AM
      0 responses
      18 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 10-24-2024, 06:58 AM
      0 responses
      24 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 10-23-2024, 08:43 AM
      0 responses
      53 views
      0 likes
      Last Post seqadmin  
      Working...
      X