help with trinity and jellyfish

[bongbimit]

Dear all,

When i using Trinity for rna-seq assembly, i setup jellyfish and have an error

make all-am
make[1]: Entering directory `/home/huypham/Tools/denovotranscriptome/trinityrnaseq_r20131110/trinity-plugins/jellyfish-1.1.6'
CXX jellyfish/libjellyfish_la-square_binary_matrix.lo
CXX jellyfish/libjellyfish_la-err.lo
In file included from jellyfish/err.cc:17:0:
./jellyfish/err.hpp: In static member function 'static void err::no_t::write(std:stream&, int)':
./jellyfish/err.hpp:42:46: error: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Werror=unused-result]
strerror_r(e, err_str, sizeof(err_str));
^
cc1plus: all warnings being treated as errors
make[1]: *** [jellyfish/libjellyfish_la-err.lo] Error 1
make[1]: Leaving directory `/home/huypham/Tools/denovotranscriptome/trinityrnaseq_r20131110/trinity-plugins/jellyfish-1.1.6'
make: *** [all] Error 2

which library i miss in ubuntu ?
thanks in advance

[bongbimit]

sr all, i 've just fix this by re-setup of trinity and now i can make jellyfish 1.1.6 tks all for read

[Lovro]

how have you fixed it ?

Hello,

I'm getting the same error when trying to "make" trinity v 2012-06-08 on ubuntu. I was wondering how did you solve the issue...

I'm trying to use this version with virusfinder2.0, since it doesn't seem to work for me with trinity versions 2.0.2 or 2.0.6 ... The latter versions, however, install ok and pass the "runME.sh" test, but don't work with virusfinder2.0.

help please!