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  • Baseless
    Member
    • Feb 2010
    • 31
    #1

    Seeking advice on setting up a breakpoint detection

    Greetings everyone,

    as a beginner with the Illumina GA IIx I am currently sitting on a mate-pair run I'd love to screen vor chromosomal breakpoints, preferrably with BreakDancer.

    But for some reason, I feel a bit stuck and could use a big push into the right direction. Is there any comprehensive resource on the net that demonstrates how to get from GA IIx Basecalls from a mate-pair-library (Pipeline 1.6, managed to align to hg19 with GERALD) to a structural variation analysis?

    Thanks for letting me steal your time. :/

    Best regards,
    Tags: None
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