Dear all,
I have compiled and installed samtools as per the standard instructions given. When i tried to fetch sub region of a sequence it is giving the header only.
I am using the command
samtools faidx test.fasta
to create index file and then to fetch the sequence
samtools faidx test.fasta Wheat:5-15
This is just printing the fasta header and not fetching the sequence
>Wheat:5-15
Please help.....
I have compiled and installed samtools as per the standard instructions given. When i tried to fetch sub region of a sequence it is giving the header only.
I am using the command
samtools faidx test.fasta
to create index file and then to fetch the sequence
samtools faidx test.fasta Wheat:5-15
This is just printing the fasta header and not fetching the sequence
>Wheat:5-15
Please help.....
![Frown](https://www.seqanswers.com/core/images/smilies/frown.png)
Comment