I'm writing a script to generate a .tbl file from our genome annotation pipeline for processing by tbl2asn and submission to GenBank. I have a bunch of partial features, which are supposed to be indicated with arrow (< >) symbols. I think I have the forward strands figured out. What I don't know about is the referse strand.
Here's an example of a reverse strand gene where the end of the gene is unknown.:
Problem is, tbl2asn still complains that the gene is missing a stop codon, so I guess it didn't recognize my arrow symbol. Does anyone have an example tbl file with partial features?
Here's an example of a reverse strand gene where the end of the gene is unknown.:
Code:
Feature Scaffold_1044.1 <250 32 gene locus_tag CFIO01_11959 <250 198 CDS 149 32 locus_tag CFIO01_11959 product Hypothetical Protein protein_id gnl|ThonCIALE|CFIO01_11959 transcript_id gnl|ThonCIALE|mrna.CFIO01_11959 codon_start 1 <250 198 mRNA 149 32 locus_tag CFIO01_11959 product Hypothetical Protein protein_id gnl|ThonCIALE|CFIO01_11959 transcript_id gnl|ThonCIALE|mrna.CFIO01_11959
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