Hi Brian,
I'm using BBtools to call indels from small RNA virus genomes using both bbmap and callvariants. It's doing a great job of calling these. We are interested in the possibility of also calling inversion events from this data. I know this is somewhat common in transcriptomics data. Do these programs have this functionality?
To be more specific, is it possible to identify reads that are aligning to both the sense and antisense of the given reference?
Thanks in advance!
James
I'm using BBtools to call indels from small RNA virus genomes using both bbmap and callvariants. It's doing a great job of calling these. We are interested in the possibility of also calling inversion events from this data. I know this is somewhat common in transcriptomics data. Do these programs have this functionality?
To be more specific, is it possible to identify reads that are aligning to both the sense and antisense of the given reference?
Thanks in advance!
James
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