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  • Giffredo
    Member
    • Feb 2014
    • 36

    #1

    bcf file table output

    Hi

    I used mpileup.

    PHP Code:
    samtools mpileup -f mi.fas sorted.bam&


    samtools mpileup -f mi.fas sorted.bam | bcftools view > ed.vcf & 
    I would to have a output like bam file or direct vcf file.
    When I use the first command line, mpileup gives me directly the reults on the unix terminal window.
    Using the second mpileup did not give me results at all..
    Last edited by Giffredo; 03-05-2014, 02:46 AM.

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