Hi
I used mpileup.
I would to have a output like bam file or direct vcf file.
When I use the first command line, mpileup gives me directly the reults on the unix terminal window.![Confused](https://www.seqanswers.com/core/images/smilies/confused.png)
Using the second mpileup did not give me results at all..
I used mpileup.
PHP Code:
samtools mpileup -f mi.fas sorted.bam&
samtools mpileup -f mi.fas sorted.bam | bcftools view > ed.vcf &
When I use the first command line, mpileup gives me directly the reults on the unix terminal window.
![Confused](https://www.seqanswers.com/core/images/smilies/confused.png)
Using the second mpileup did not give me results at all..
![Frown](https://www.seqanswers.com/core/images/smilies/frown.png)