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  • tophat/bowtie compatibility

    Hi nerds,
    I am using the Tuxedo suite for an RNAseq dataset. Apparently the latest versions of bowtie2 and tophat are incompatible. Does anyone know what versions of the programs play nice?
    Thank you,
    Sarah

  • #2
    The previous version of bowtie2. 2.1.0. Just use that one with Tophat.

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