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  • skingan
    Member
    • Feb 2010
    • 17
    #1

    tophat/bowtie compatibility

    Hi nerds,
    I am using the Tuxedo suite for an RNAseq dataset. Apparently the latest versions of bowtie2 and tophat are incompatible. Does anyone know what versions of the programs play nice?
    Thank you,
    Sarah
    Tags: bowtie, rnaseq, tophat
    • westerman
      Rick Westerman
      • Jun 2008
      • 1104
      #2
      The previous version of bowtie2. 2.1.0. Just use that one with Tophat.

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