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These are the individual processes that are used by cuffdiff. For example if you have a hyper-threaded core-i3, use -p 4. It uses as much CPU power as possible. So it shortens the analysis time. If you have a 4-core CPU, you are better off using -p 8. It depends on how many thread your processor can handle. -
Cuffdiff thread option
Can anyone explain to me the following option in CuffDiff:
-p/--num-threads <int>
Use this many threads to align reads. The default is 1.
What are threads? Will it take longer to run the analysis if multiple threads are used? Will such an analysis be more accurate?
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Developments in sequencing technologies and methodologies have transformed the field of epigenetics, giving researchers a better way to understand the complex world of gene regulation and heritable modifications. This article explores some of the diverse sequencing methods employed in the study of epigenetics, ranging from classic techniques to cutting-edge innovations while providing a brief overview of their processes, applications, and advances.
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After covering QC and alignment tools in the first segment and variant analysis and genome assembly in the second segment, we’re wrapping up with a discussion about tools for differential gene expression analysis and data visualization. In this article, we include recommendations from the following experts: Dr. Mark Ziemann, Senior Lecturer in Biotechnology and Bioinformatics, Deakin University; Dr. Medhat Mahmoud Postdoctoral Research Fellow at Baylor College of Medicine;...05-23-2023, 12:26 PM -
Continuing from our previous article, we share variant analysis and genome assembly tools recommended by our experts Dr. Medhat Mahmoud, Postdoctoral Research Fellow at Baylor College of Medicine, and Dr. Ming "Tommy" Tang, Director of Computational Biology at Immunitas and author of From Cell Line to Command Line.
Variant detection and analysis tools
Mahmoud classifies variant detection work into two main groups: short variants (<50...05-19-2023, 10:03 AM
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