Hi There,
I am getting the following error message from BRIG when trying to run a simple genome comparison with 4 bacterial genomes.
Rendering CGVIEW image...
java -Xmx1000m -jar cgview\cgview.jar -f jpg -i I:\TPcomparison\scratch\TP6375.fasta.xml -o I:\TPcomparison\TP6375.fasta.jpg
Parsing XML input.
SYS_ERRORrg.xml.sax.SAXException: value for 'sequenceLength' attribute in cgview element must be less than 20000000 in null at line 1 column 1050
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.handleCgview(CgviewFactory.java:593)
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.startElement(CgviewFactory.java:510)
SYS_ERROR: at org.apache.xerces.parsers.AbstractSAXParser.startElement(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanStartElement(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLNSDocumentScannerImpl$NSContentDispatcher.scanRootElementHook(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.DTDConfiguration.parse(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.createCgviewFromFile(CgviewFactory.java:300)
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewIO.main(CgviewIO.java:1056)
SYS_ERROR:The following error occurred: org.xml.sax.SAXException: value for 'sequenceLength' attribute in cgview element must be less than 20000000 in null at line 1 column 1050
Done.
any help?
I am getting the following error message from BRIG when trying to run a simple genome comparison with 4 bacterial genomes.
Rendering CGVIEW image...
java -Xmx1000m -jar cgview\cgview.jar -f jpg -i I:\TPcomparison\scratch\TP6375.fasta.xml -o I:\TPcomparison\TP6375.fasta.jpg
Parsing XML input.
SYS_ERRORrg.xml.sax.SAXException: value for 'sequenceLength' attribute in cgview element must be less than 20000000 in null at line 1 column 1050
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.handleCgview(CgviewFactory.java:593)
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.startElement(CgviewFactory.java:510)
SYS_ERROR: at org.apache.xerces.parsers.AbstractSAXParser.startElement(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanStartElement(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLNSDocumentScannerImpl$NSContentDispatcher.scanRootElementHook(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source)
SYS_ERROR: at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.DTDConfiguration.parse(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
SYS_ERROR: at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewFactory.createCgviewFromFile(CgviewFactory.java:300)
SYS_ERROR: at ca.ualberta.stothard.cgview.CgviewIO.main(CgviewIO.java:1056)
SYS_ERROR:The following error occurred: org.xml.sax.SAXException: value for 'sequenceLength' attribute in cgview element must be less than 20000000 in null at line 1 column 1050
Done.
any help?
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