Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Potentially basic question involving IGV

    I'm sorry for asking a potentially basic question, but can anyone tell me what the direction of the arrows indicates in the picture?
    These are two genes taken from somewhere in chromosome 17 of the human reference hg19, being observed by IGV.
    Thank you.


  • #2
    Direction (and thus strand) of transcription.

    Comment


    • #3
      Thank you for your reply. I have another question. What does a red variant mean on IGV? I read through the online document about VCF files here http://www.broadinstitute.org/igv/viewing_vcf_files, but it only mentions what dark blue, cyan and grey mean. Also, what does it mean if a variant has multiple colors? In my picture, I have two calls with dark blue over red.

      Here is an example.

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Recent Advances in Sequencing Analysis Tools
        by seqadmin


        The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
        Yesterday, 07:48 AM
      • seqadmin
        Essential Discoveries and Tools in Epitranscriptomics
        by seqadmin




        The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
        04-22-2024, 07:01 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Today, 06:57 AM
      0 responses
      9 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, Yesterday, 07:17 AM
      0 responses
      13 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 05-02-2024, 08:06 AM
      0 responses
      19 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-30-2024, 12:17 PM
      0 responses
      23 views
      0 likes
      Last Post seqadmin  
      Working...
      X