Hi all,
I'm a new comer to bioinformatics and have developed a pipeline to do metagenomic analysis using Galaxy, and currently running a fasta file of 4mb, (around 4000sequences). It seems like the mega blasting process would consume more than two days to finish up, so I doubt whether there is a problem in my proceedings . Could anyone give me the time consumptions for their respectie metagenomic pipelines. ? (Reads are averagely 80 bps generated by ion torrent PGM)
I'm a new comer to bioinformatics and have developed a pipeline to do metagenomic analysis using Galaxy, and currently running a fasta file of 4mb, (around 4000sequences). It seems like the mega blasting process would consume more than two days to finish up, so I doubt whether there is a problem in my proceedings . Could anyone give me the time consumptions for their respectie metagenomic pipelines. ? (Reads are averagely 80 bps generated by ion torrent PGM)
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