Hello!
I would like to finish a bacterial genome of about 3millions bp. I have got two different results of the same genome from SOLID and Illumina sequencing. From Illumina I got about 25 contigs so I would like to close the gaps between them by aligning the contigs I obtained from the SOLID sequencing, from which I got many more contigs and also shorter ones.
Could you please suggest me an easy way to do that?
I tried with Mauve, I got the alignment but apparently the software eliminates the gaps so I can only see the contigs sequences.
I tried to do that with iMAGE software and Cap3 but I couldn't find any accessible usermanual.
Also I don't have Linux, but I'm working on a MacOS 10.8
thank you!
I would like to finish a bacterial genome of about 3millions bp. I have got two different results of the same genome from SOLID and Illumina sequencing. From Illumina I got about 25 contigs so I would like to close the gaps between them by aligning the contigs I obtained from the SOLID sequencing, from which I got many more contigs and also shorter ones.
Could you please suggest me an easy way to do that?
I tried with Mauve, I got the alignment but apparently the software eliminates the gaps so I can only see the contigs sequences.
I tried to do that with iMAGE software and Cap3 but I couldn't find any accessible usermanual.
Also I don't have Linux, but I'm working on a MacOS 10.8
thank you!
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