Greetings,
I want to compare metagenomes generated by Illumina HiSeq. Metagenomic sequences were assembled so I want to compare different assemblies. I have heard that BLAST could be used for comparing assemblies. In this case, what blast program can be suggested, blastn or blastx? Can mappers be used (bow tie, BWA, etc)? Any suggestion or advice would be appreciated!
I want to compare metagenomes generated by Illumina HiSeq. Metagenomic sequences were assembled so I want to compare different assemblies. I have heard that BLAST could be used for comparing assemblies. In this case, what blast program can be suggested, blastn or blastx? Can mappers be used (bow tie, BWA, etc)? Any suggestion or advice would be appreciated!
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