Hi,
I was studying the SAM protocol on SourceForge:
There is one command that merge sorted alignments and remove potential PCR/optical duplicates:
samtools merge -rh rg.txt - ga.bam 454.bam | samtools rmdup - - | samtools rmdup -s - aln.bam
My question is why there are two "rmdup" operations? Is this a typo?
Thanks!
I was studying the SAM protocol on SourceForge:
There is one command that merge sorted alignments and remove potential PCR/optical duplicates:
samtools merge -rh rg.txt - ga.bam 454.bam | samtools rmdup - - | samtools rmdup -s - aln.bam
My question is why there are two "rmdup" operations? Is this a typo?
Thanks!
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