Does any one know how to implement the options in the bwbble allignment program? I can't seem to get it correct
Here are some commands i have tried
bwbble align -M 29Family_L1MdA_I_LW.fa SRR519779test_LW.fastq
bwbble align M 29Family_L1MdA_I_LW.fa SRR519779test_LW.fastq
bwbble align 29Family_L1MdA_I_LW.fa SRR519779test_LW.fastq M
bwbble align 29Family_L1MdA_I_LW.fa SRR519779test_LW.fastq -n 5
Thanks for anyone who can help
Leanne
Here are some commands i have tried
bwbble align -M 29Family_L1MdA_I_LW.fa SRR519779test_LW.fastq
bwbble align M 29Family_L1MdA_I_LW.fa SRR519779test_LW.fastq
bwbble align 29Family_L1MdA_I_LW.fa SRR519779test_LW.fastq M
bwbble align 29Family_L1MdA_I_LW.fa SRR519779test_LW.fastq -n 5
Thanks for anyone who can help
Leanne
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