Hi All,
I am using following script to generate union bed graph files
#!/bin/bash
FILES=''
for file in $(find /raid/development/anusha/BamFilesCov500+region/ -name \*.sum.union.cg8500.bedgraph)
do
FILES="$FILES $file"
done
unionBedGraphs -i $FILES > /raid/development/anusha/DGFDATA_Tissue_DATA_testfm/union.cg8500.bedgraph
I see proper information in global variable $FILES , $files
I am getting the following error
bedtools: unionBedGraphs.cpp:99: CHRPOS UnionBedGraphs::ConsumeNextCoordinate(): Assertion `!queue.empty()' failed.
/raid/software/bin/unionBedGraphs: line 2: 11225 Aborted ${0%/*}/bedtools unionbedg "$@"
I am not understanding what caused this error . Hope to get some help from some one .
I am using following script to generate union bed graph files
#!/bin/bash
FILES=''
for file in $(find /raid/development/anusha/BamFilesCov500+region/ -name \*.sum.union.cg8500.bedgraph)
do
FILES="$FILES $file"
done
unionBedGraphs -i $FILES > /raid/development/anusha/DGFDATA_Tissue_DATA_testfm/union.cg8500.bedgraph
I see proper information in global variable $FILES , $files
I am getting the following error
bedtools: unionBedGraphs.cpp:99: CHRPOS UnionBedGraphs::ConsumeNextCoordinate(): Assertion `!queue.empty()' failed.
/raid/software/bin/unionBedGraphs: line 2: 11225 Aborted ${0%/*}/bedtools unionbedg "$@"
I am not understanding what caused this error . Hope to get some help from some one .