Yes, "only matching that sequence" is what I mean. So in seal if you use ambig=all then that read (hit) is added to all targets it matched (if there were multiple best matches)?
Or say...what happens when a read can match one sequence with 20 kmers and a second with 18 kmers?
Or say...what happens when a read can match one sequence with 20 kmers and a second with 18 kmers?
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