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  • Add a new line after the last file recording

    Dear all,

    I used ShortRead package to filter the data and then saved as fastq file. But when I run the qa function again there is error in .local(dirPath, pattern, ...): > > ShortRead internal: too many 'snap' entries.

    In the bioc-sig-sequencing mailing list, Martin already mentioned it might be due to the missing last line as separator.


    But I do not know how to add a new line after the last line in my file. Does anyone give me some hints?

    Many thanks in advance!
    Wei

  • #2
    You could do it in Perl:

    Code:
    open OUTFILE, ">>file.fastq" or die $!; # open for append
    print OUTFILE "\n";
    close OUTFILE;

    Comment


    • #3
      Thank you so much nodonb! That works! even I do not know the meaning of each code.

      Comment

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